I should state first that I'm an oldskool fan- I'm a Dromana shipper from way back when. I cried when Adric died. My tastes may not be yours, so unless you want slashy goodness, angst, babyfic and Timelord on Timelord fun... I probably won't push individual stories. What I can push is archives. With that said- let me reach into my brown bag of links and shower you with ficcage.

There are great things at Teaspoon:
http://www.whofic.com/

Some slashy goodness, and other stuff:
http://del.icio.us/apollymi/doctor-who-fic

My home away from Home:http://community.livejournal.com/otp_probably/

More Goodies here:http://mirrordance.net/doctorwho/index.html

And here:
http://bitextual.gatefiction.com/nostalgia/drwho.htm

I love Calapine's work: http://calapine.livejournal.com/tag/ficage

Communities:
http://community.livejournal.com/doctorwho/

http://community.livejournal.com/dwicons/